NCF consists of a Board of Directors (21 members) and regular staffs who carry out day to day functions. The general assembly elects the Board of Directors for a 4-year term. The Board comprises of Chairperson, Senior Vice-chairperson, Vice Chairperson, 16 members including at least 2 women and 2 ex-officio members who are the immediate past Chairperson and the Registrar from the Cooperative Department of Nepal Government. The General Manager of NCF serves as the secretary of the Board. The Accounts Committee comprises 3 members including a convener.
NCF/N has its six departments as:
- Administration and Human Resources Management
- Account, Finance and Planning
- Organizational Development and Market Promotion
- Education and Training
- Research, Publication and Communication